Basic Information
VIS ID
TVIS30009742
Fusion event
HIV-GDA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
74804164/72189248 (Hg38)
End
74804164/72189248 (Hg38)
Orient
+
Location type
Intronic
Target gene
GDA
miRNAs that regulate target gene
hsa-mir-492 ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-101-2/Upstream/1379164; hsa-let-7a-1/Downstream/11780500;
Nearest TSS
ENST00000422679/Upstream/39773; ENST00000477618/Downstream/4574;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/39261, chr9-CpG: 176/Downstream/174981
Upstream sequence
acagaggagactctagacttttttttttttttttttttttttttttttggagacagggtttcactttgtcacacaggctggaactacagtggtgtgatga
Downstream sequence
cagcttactgcagccttgacctcccaggcttaagtgatcctcccaccttagcctcctgaatagctggggttacaggcatgcatccccatacctggctaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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