Basic Information
VIS ID
TVIS30009744
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
75581985/72967069 (Hg38)
End
75581985/72967069 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/2156985; hsa-let-7a-1/Downstream/11002679;
Nearest TSS
ENST00000422679/Upstream/14013; ENST00000468639/Downstream/71653;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/601241, chr9-CpG: 43/Downstream/1529793
Nearby gene
ALDH1A1(No orient, 13752)
Nearest cancer related gene
ALDH1A1(OG, No orient, 13752)
Upstream sequence
gtttgaaggcaaatgcagtctttttaatttcatcttggctgggagaagaaatctgttcttttaatttcttttaaatgttttaaaaATCATTTATACATAT
Downstream sequence
ACATAGCATAAAAATTCAAGTAGATCTTAATCAGGtattttaaatacaaccagacattatatttatattgttttatacatttattgagatacgtttgttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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