Basic Information
VIS ID
TVIS30009745
Fusion event
HIV-LOC105376093 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
79149023/76534107 (Hg38)
End
79149023/76534107 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376093
Nearest miRNA
hsa-mir-101-2/Upstream/5724023; hsa-let-7a-1/Downstream/7435641;
Nearest TSS
ENST00000422679/Upstream/74877; ENST00000645839/Downstream/81055;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/74462, chr9-CpG: 75/Downstream/371780
Nearby gene
GCNT1(No orient, 26691)
Upstream sequence
aaaaatattaaattataatctttcatcttaaaaatagcatttttattatatccttcttttatctttctgtttatctagctggctaaccacagaaattctg
Downstream sequence
agaaaagtgactaaatgttactaaatgttgagattgcttgctcctagctatttggatttggggtgGAGGAGGATAAAACTTTTTTTGTGTGTCTTTTGGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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