Basic Information
VIS ID
TVIS30009749
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
82717019/80102104 (Hg38)
End
82717019/80102104 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/9292020; hsa-let-7a-1/Downstream/3867644;
Nearest TSS
ENST00000422679/Upstream/71525; ENST00000413050/Downstream/769191;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/528459, chr9-CpG: 255/Downstream/1585120
Nearby gene
LINC01507(No orient, 67549)
Upstream sequence
aatgttgcagtgtcttcatatctcaataatacttattatcttttttactatagccatctagtgggtatgaagtgatatctcaatgtggttttgatttgtg
Downstream sequence
tttcctaatgacagatggcattgaatatcttttcacatgcttgcttgccatttgtgtatcttctttgaaacaataattattcaagttatttgcccatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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