Basic Information
VIS ID
TVIS30009757
Fusion event
HIV-GAS1RR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
89570724/86955809 (Hg38)
End
89570724/86955809 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
GAS1RR
Nearest miRNA
hsa-mir-101-2/Upstream/2985952; hsa-let-7a-1/Downstream/1790027;
Nearest TSS
ENST00000422679/Upstream/7110; ENST00000623052/Downstream/86317;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/7026, chr9-CpG: 18/Downstream/55785
Upstream sequence
AACACGATCCCGCTTTCACTGATGAGTGTATCAACAGAGACAGAGCAGCTGTTTAACATCATCAGCCTACTGTTCTCTATGGAGCAGAAAACACACCCCC
Downstream sequence
TCATCATTGCTTTGGAACTGGGGAGATCAAGATCCTGGCTCAGTTTCAATATCTAATAACATGAGGAAATACCCACAAAATTAGTAGGAGCTCCAATTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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