Basic Information
VIS ID
TVIS30009759
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
90868260/88253345 (Hg38)
End
90868260/88253345 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/4283488; hsa-let-7a-1/Downstream/492491;
Nearest TSS
ENST00000422679/Upstream/278592; ENST00000462844/Downstream/135074;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/72680, chr9-CpG: 169/Downstream/134481
Nearby gene
SPATA31C2(No orient, 118360)
Upstream sequence
AACCAAACAAGCATTTGTTGACAAACTATTCTACACCAAGATATGAGTACAACCTACAGTAATTTATTGTCACACATAAATAAATAAGATATAGCATGGC
Downstream sequence
AATTTCAACAACTGAGATAGGAATGAAGTGTTGTGGGAACTTGGCAGAAGCCAGGGAAAGGGGGAGAGCAGACAACTCTTAAATGCCTGTGGAAAGACCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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