Basic Information
VIS ID
TVIS30009765
Fusion event
HIV-LINC00484 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
93932859/91170577 (Hg38)
End
93932859/91170577 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
LINC00484
Nearest miRNA
hsa-mir-101-2/Upstream/1147042; hsa-let-7a-1/Downstream/465674;
Nearest TSS
ENST00000422679/Upstream/7490; ENST00000437389/Downstream/92;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/10180, chr9-CpG: 76/Downstream/22641
Nearby gene
AUH(No orient, 43238)
Upstream sequence
agatataggtattgctaatatttcctcctattctgtgacttgccttcatttcttagtagtgcctttgaaaagcaaaagctgtaaattttgataagtccag
Downstream sequence
tttatcaattttttatggattgtgctttatgtatcctatgtaaaaaacatatgccactcaaggttgcaaggattgtctcctatgttttcttctaggattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate