Basic Information
VIS ID
TVIS30009768
Fusion event
HIV-IPPK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
95414475/92652193 (Hg38)
End
95414475/92652193 (Hg38)
Orient
+
Location type
Intronic
Target gene
IPPK
miRNAs that regulate target gene
hsa-mir-590-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-382-3p ; hsa-mir-3163 ; hsa-mir-3662 ; hsa-mir-4460 ; hsa-mir-3591-5p ; hsa-mir-4727-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-139-5p ; hsa-mir-1296-3p ; hsa-mir-4773 ; hsa-mir-3120-3p ; hsa-mir-3133 ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-7855-5p ; hsa-mir-7973 ; hsa-mir-589-5p ; hsa-mir-6846-3p ; hsa-mir-6859-3p ; hsa-mir-9-5p ; hsa-mir-6793-3p ; hsa-mir-627-5p ; hsa-mir-924 ; hsa-mir-4725-5p ; hsa-mir-211-3p ; hsa-mir-3065-3p ; hsa-mir-1306-5p ; hsa-mir-140-3p ; hsa-mir-125b-5p ; hsa-mir-4319 ; hsa-mir-125a-5p
Nearest miRNA
hsa-mir-101-2/Upstream/124135; hsa-let-7a-1/Downstream/942648;
Nearest TSS
ENST00000422679/Upstream/14114; ENST00000494669/Downstream/18072;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/325869, chr9-CpG: 89/Downstream/17337
Upstream sequence
AGAATTGTATCCATGAGCTCCCAGGATTTCTATCCCTGATAATGAAGTTTCTGGCAAAAGAATTACTGAAAACTggctgggcacggtggctcacgcctat
Downstream sequence
aatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctattaaaaatac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate