Basic Information
VIS ID
TVIS30009769
Fusion event
HIV-ZNF484 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
95636088/92873806 (Hg38)
End
95636088/92873806 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF484
miRNAs that regulate target gene
hsa-mir-4711-3p ; hsa-mir-451b
Nearest miRNA
hsa-mir-101-2/Upstream/345748; hsa-let-7a-1/Downstream/721035;
Nearest TSS
ENST00000422679/Upstream/108994; ENST00000494669/Downstream/4202;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/36083, chr9-CpG: 16/Downstream/39457
Upstream sequence
agtatagaaaaagaaaacacaaactatacacaatctctggcagaataatcaatacaaaggaacacattccaacttattttatgaggtcagggttatcgtg
Downstream sequence
atacctaaaccagaaatagtaccaaaagaaaaaacagaaagagagacagaaagaaaaaaaaaagcgatatccttcataaatatgatacaaaaacccttaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate