Basic Information
VIS ID
TVIS30009773
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
98485285/95723003 (Hg38)
End
98485285/95723003 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/636909; hsa-mir-12126/Downstream/1640551;
Nearest TSS
ENST00000422679/Upstream/72841; ENST00000600140/Downstream/49320;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/169726, chr9-CpG: 32/Downstream/6104
Nearby gene
LINC00476(No orient, 83085)
Upstream sequence
TTTATTTTCTTTATCTGTTTTGATAATATAAATCCTGTGCTACTTCTTAACCATTGGTTCCACTTTAATAAGTCAACAGTGGTTGCCCGGTCCCCTCTTC
Downstream sequence
TTACCATTGTATCCTAAAGGAAGAACTGAGAGATTTGGTGCTCCAAATCCCAGGAGTTTCTGCATGACCTCATCAGTGTCAGGAGAGCCAAGCCCAGATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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