Basic Information
VIS ID
TVIS30009775
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
99819265/97056983 (Hg38)
End
99819265/97056983 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1970889; hsa-mir-12126/Downstream/306571;
Nearest TSS
ENST00000422679/Upstream/17340; ENST00000420204/Downstream/140704;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/17541, chr9-CpG: 71/Downstream/19942
Nearby gene
CTSV(No orient, 17340)
Upstream sequence
ATATATATATATATATATGCCTGTGTGACAGAGACCCCTGTCTCAAAAACATAATACATAATTTTTTATATAAttttttattttttgagacagagttttg
Downstream sequence
ctctttcacccaggctagagtgcagtggtgtgatcttggctcactgcaacctccacttcccgggttcaagcgattctcctgcctcagccttccaagtagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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