Basic Information
VIS ID
TVIS30009776
Fusion event
HIV-TDRD7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100199465/97437183 (Hg38)
End
100199465/97437183 (Hg38)
Orient
+
Location type
Intronic
Target gene
TDRD7
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-let-7a-1/Upstream/73502; hsa-mir-12126/Downstream/791966;
Nearest TSS
ENST00000422679/Upstream/25233; ENST00000492428/Downstream/43159;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/24519, chr9-CpG: 116/Downstream/64210
Upstream sequence
TGTCAAtgcattaattatctattgctgtgttacagattaccccaaagttattagcttacaacaagacacattttcttacctcatagtttctgtgggtcag
Downstream sequence
gaaggaagacacggtcaagctgggtcctctgcttcagggtctctcatgaggctgctgtcaaggtgtcagccatggctgggatcttatctgaaggctcagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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