VISDB Viral Integration Site DataBase

VIS ID

TVIS30009780

Fusion event

HIV-RAD23B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q31.2

Reference genome

Start

End

110062396/107300115 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-30a-5p ; hsa-mir-155-5p ; hsa-mir-1301-3p ; hsa-mir-106b-5p ; hsa-mir-197-3p ; hsa-mir-106a-5p ; hsa-mir-92a-3p ; hsa-mir-494-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-let-7a-2-3p ; hsa-mir-96-3p ; hsa-let-7g-3p ; hsa-mir-371a-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-1182 ; hsa-mir-3154 ; hsa-mir-371b-5p ; hsa-mir-573 ; hsa-mir-595 ; hsa-mir-3611 ; hsa-mir-3616-5p ; hsa-mir-4795-5p ; hsa-mir-7978 ; hsa-mir-361-5p ; hsa-mir-2052 ; hsa-mir-2115-3p ; hsa-mir-3074-3p ; hsa-mir-4328 ; hsa-mir-3144-3p ; hsa-mir-485-5p ; hsa-mir-3650 ; hsa-mir-493-5p ; hsa-let-7c-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-342-3p ; hsa-mir-4762-5p ; hsa-mir-6793-3p ; hsa-mir-510-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-127-5p ; hsa-mir-7843-3p

Nearest miRNA

hsa-let-7a-1/Upstream/699093; hsa-mir-12126/Downstream/1746114;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/16093, chr9-CpG: 67/Downstream/165571

Nearest cancer related gene

RAD23B(TSG, No orient, 0)

Upstream sequence

TATTTGAGGTTTTGGAAACATTAATAATTATGTATATAATTTTTGTCTTCCATTATTTATTCAGATTCTGGATTGTCATTTTTTATTTAGACTTTTTCCA

Downstream sequence

AAACAAATCTTTATTTTTCCTATAGGTGAAAGCACTGAAAGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCAGTAGCAGGTCAAAAATTAATT