Basic Information
VIS ID
TVIS30009783
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
114053333/111291053 (Hg38)
End
114053333/111291053 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA9E
Nearest miRNA
hsa-let-7a-1/Upstream/19839; hsa-mir-12126/Downstream/641047;
Nearest TSS
ENST00000422679/Upstream/6217; ENST00000374374/Downstream/37467;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/251958, chr9-CpG: 230/Downstream/191711
Nearby gene
MIR7702(No orient, 19839)
Upstream sequence
gtttttaaactttttttatttgttaattagcttgatttaatcattccatagtgtaaatatggatcaaaacacatcctgtatcccataaatatacaatata
Downstream sequence
tatgattattatttttcaattaaaaataaaaTTTAAGAAAGAAAGTACATTACCTGTGGAGAACAAATGCTATATATCTGTTAATGCAGGGCTGGAATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate