VISDB Viral Integration Site DataBase

VIS ID

TVIS30009786

Fusion event

HIV-PTBP3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q32

Reference genome

Start

End

114989858/112227578 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-221-3p ; hsa-mir-21-5p ; hsa-mir-1229-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-30c-5p ; hsa-mir-197-3p ; hsa-mir-210-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4262 ; hsa-mir-7154-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-371b-5p ; hsa-mir-205-3p ; hsa-mir-3613-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-5089-3p ; hsa-mir-580-3p ; hsa-mir-222-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-891b ; hsa-mir-15b-3p ; hsa-mir-8060 ; hsa-mir-4728-3p ; hsa-mir-4712-3p ; hsa-mir-4672 ; hsa-mir-5582-5p ; hsa-mir-6768-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-506-3p ; hsa-mir-6772-3p ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4496 ; hsa-mir-6835-3p ; hsa-mir-377-3p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-607 ; hsa-mir-29b-2-5p ; hsa-mir-6715b-3p

Nearest miRNA

hsa-let-7a-1/Upstream/295409; hsa-mir-12126/Downstream/1981856;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/52034, chr9-CpG: 141/Downstream/105291

Upstream sequence

TTTAAAGCGATGCAAAGGACTATTGCTGAAATCCTTAGTCAGACCTTGGTCTTCTTGTCCCTCTCGAGGAAGCTGTACTGCTTGATGTTTGGACAGTGTA

Downstream sequence

GCACGAAGCACTTTCCCATAAAGTCTCTGACCACTTAGATGGTTCATTGCTAGTGCATGGGAAGAAAATTTTAAAGTTTGAGTATTAGGATAGATTTCTC