VISDB Viral Integration Site DataBase

VIS ID

TVIS30009790

Fusion event

HIV-PRPF4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q32

Reference genome

Start

End

116047813/113285533 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-519b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-519a-3p ; hsa-mir-302e ; hsa-mir-4503 ; hsa-mir-4720-3p ; hsa-mir-377-5p ; hsa-mir-6086 ; hsa-mir-1303 ; hsa-mir-655-5p ; hsa-mir-6856-5p ; hsa-mir-6736-3p ; hsa-mir-6758-5p ; hsa-mir-619-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4252 ; hsa-mir-1273g-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-6513-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-6792-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6890-3p ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6887-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p

Nearest miRNA

hsa-let-7a-1/Upstream/1353364; hsa-mir-12126/Downstream/923901;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/9584, chr9-CpG: 31/Downstream/54596

Upstream sequence

agtggcgcgatctcggctcactgcaagctccacctcctgggttcacgccattctcctacctcagcctcccaagtagctgggactacaggcacccgccacc

Downstream sequence

gcacccagctaattttttgtatttttagtagagacagggtttcaccgtgttagccaggatgggctcgatctcctgaccttgtgatctgcccgccttggcc