Basic Information
VIS ID
TVIS30009794
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
117761517/114999237 (Hg38)
End
117761517/114999237 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9E ; FRA9B
Nearest miRNA
hsa-let-7a-1/Upstream/789708; hsa-mir-12126/Downstream/5245742;
Nearest TSS
ENST00000422679/Upstream/68642; ENST00000477580/Downstream/36659;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/387441, chr9-CpG: 77/Downstream/1154846
Nearby gene
TNC(No orient, 20337)
Upstream sequence
aaatgaggaataaataaatacaatggataataatttagtaataaaaaaatgaaatattgacacatgctacaataaatgttcagtaaaataagtcagttat
Downstream sequence
aaaggaccacataattttatgactcttcttatatgaaatttacacaataggcaaatctgcagagacagaaagtagattagcagtggcctatggcttggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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