VISDB Viral Integration Site DataBase

VIS ID

TVIS30009797

Fusion event

HIV-PHF19 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.2

Reference genome

Start

End

123642807/120880529 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-193b-3p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-103a-3p ; hsa-mir-96-5p ; hsa-mir-16-5p ; hsa-mir-92b-3p ; hsa-mir-218-5p ; hsa-mir-1587 ; hsa-mir-3620-5p ; hsa-mir-6748-5p ; hsa-mir-4417 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-7974 ; hsa-mir-6828-5p ; hsa-mir-6847-5p ; hsa-mir-6859-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-4796-3p ; hsa-mir-659-3p ; hsa-mir-218-1-3p ; hsa-mir-1827 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-488-5p ; hsa-mir-1245b-3p ; hsa-mir-4781-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-7150 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-548au-3p ; hsa-mir-4660 ; hsa-mir-4774-5p ; hsa-mir-4490 ; hsa-mir-1298-3p ; hsa-mir-3126-3p ; hsa-mir-4715-5p ; hsa-mir-5700 ; hsa-mir-3974 ; hsa-mir-223-3p ; hsa-mir-449b-5p ; hsa-mir-34c-5p ; hsa-mir-449a ; hsa-mir-4477a ; hsa-mir-548e-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-15a-5p ; hsa-mir-6838-5p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-1273h-3p ; hsa-mir-642a-5p ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6887-3p ; hsa-mir-4640-3p

Nearest miRNA

hsa-let-7a-1/Upstream/635479; hsa-mir-12126/Downstream/1239553;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/2871, chr9-CpG: 32/Downstream/13943

Upstream sequence

ggttgcattgagcgaaatcgtgccactgcactccagcctgagtgactgagcgagactccgtctcaacaaacaaacagcagaccagatagattaattgtga

Downstream sequence

tgtagtcatacaatggaataatatactgggagtaaaaataaactaagtctgcagcctcaacatagttacaccctaggaaaaaaactaacatcaagttgta