Basic Information
VIS ID
TVIS30009798
Fusion event
HIV-CNTRL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
123872274/121109996 (Hg38)
End
123872274/121109996 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNTRL
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-let-7a-1/Upstream/864946; hsa-mir-12126/Downstream/1010086;
Nearest TSS
ENST00000422679/Upstream/21700; ENST00000468952/Downstream/1067;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/34689, chr9-CpG: 121/Downstream/91093
Upstream sequence
gccagttcatattggttttgcctattATCTGTTAGTCCCAAGGACTATTAGATGCCTAAAATAATTCTGGGTCTTATTCTAAGAGCTTATATTTGAAAAA
Downstream sequence
CATTTTTATTATCTTTTGCAGAATATCTAATGATAATATCATCTGTGATTATGTGAAGTTTTCCATTTTAAAAAAGTAGTTGCTTGTGCATTAGGCCAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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