VISDB Viral Integration Site DataBase

VIS ID

TVIS30009799

Fusion event

HIV-RAB14 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.2

Reference genome

Start

End

123948985/121186707 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-451a ; hsa-mir-151a-5p ; hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-544a ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-148a-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-487b-5p ; hsa-mir-487a-5p ; hsa-mir-513a-5p ; hsa-mir-409-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-95-5p ; hsa-mir-2115-3p ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-181c-3p ; hsa-mir-3120-3p ; hsa-mir-3529-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-6832-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-548at-5p ; hsa-mir-320a ; hsa-mir-27b-5p

Nearest miRNA

hsa-let-7a-1/Upstream/941657; hsa-mir-12126/Downstream/933375;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/111400, chr9-CpG: 121/Downstream/14382

Upstream sequence

tctacgttttgcccagtatcctccaatgctaaagttttatgaaattaATGCAGATCCCTTTTAAAATCATAATTTCAGATTTCATAGTCTTCACATGAGA

Downstream sequence

TCACCACTACATTCATAATAGTAATGACAAACATGAACAAAAAACCTAGGTATAATAAAATGCAAAACCTGGTTTAATAAGAACTGAAAAATAACTGTTA