Basic Information
VIS ID
TVIS30009801
Fusion event
HIV-RC3H2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
125651579/122889300 (Hg38)
End
125651579/122889300 (Hg38)
Orient
-
Location type
Intronic
Target gene
RC3H2
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-183-5p
Nearest miRNA
hsa-let-7a-1/Upstream/769133; hsa-mir-12126/Downstream/222246;
Nearest TSS
ENST00000422679/Upstream/33563; ENST00000402311/Downstream/8234;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/60655, chr9-CpG: 69/Downstream/15535
Upstream sequence
aaattaaacacaaaattatatagtcaaatatcagtttcttcccttattgtttctagattttgagttaaagttagaaaaatgttccctactcacaggttat
Downstream sequence
aaagaaatatattcttttattggtttttattaccagtatatttttatttttaataaggatttctgacgtttgtaatttatatagtttatagagaataaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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