VISDB Viral Integration Site DataBase

VIS ID

TVIS30009803

Fusion event

HIV-RABGAP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.2

Reference genome

Start

End

125785404/123023125 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-9-5p ; hsa-mir-21-5p ; hsa-mir-93-3p ; hsa-mir-504-5p ; hsa-mir-92a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-541-5p ; hsa-mir-4668-5p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-656-3p ; hsa-mir-5011-5p ; hsa-mir-4433b-5p ; hsa-mir-4286 ; hsa-mir-4301 ; hsa-mir-6790-5p ; hsa-mir-4758-5p ; hsa-mir-4658 ; hsa-mir-4765 ; hsa-mir-1238-5p ; hsa-mir-1236-5p ; hsa-mir-6776-3p ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-224-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-342-3p ; hsa-mir-3681-3p ; hsa-mir-500b-3p ; hsa-mir-6849-3p ; hsa-mir-6879-3p ; hsa-mir-1468-3p ; hsa-mir-3145-3p ; hsa-mir-548p ; hsa-mir-6083

Nearest miRNA

hsa-let-7a-1/Upstream/902958; hsa-mir-12126/Downstream/88421;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/81807, chr9-CpG: 131/Downstream/244948

Upstream sequence

tataaatacactgcggtgaccactatcaagagcaagaacatatccataacccccaaaagttactcatgtacctttctagtcataaatacccttactacac

Downstream sequence

ccctgagtaatcattattctggcttttctctccttaggttagttttgattgttcttgaattttttctgttttggagatggagtcttgccctgtcaccgag