Basic Information
VIS ID
TVIS30009808
Fusion event
HIV-MAPKAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
End
128274593/125512314 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7a-1/Upstream/818516; hsa-mir-12126/Downstream/2178373;
Upstream sequence
AAGTGCCTGCCAAAGTCCGAAGAGAGGGAAGACacactgtcgcctccattgctctgtgtcttctttctagagacccgtgggagaaacttctttcagatcc
Downstream sequence
tggtatcaggaaaagctgtacttccctggagcaaagggcttgcttttgtatctttagaaagtttaacataaatcttgtaactagctcctatcatgtccct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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