Basic Information
VIS ID
TVIS30009809
Fusion event
HIV-MAPKAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
128424155/125661876 (Hg38)
End
128424155/125661876 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAPKAP1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-26b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/968078; hsa-mir-12126/Downstream/2028811;
Nearest TSS
ENST00000422679/Upstream/4166; ENST00000492314/Downstream/7969;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/253003, chr9-CpG: 58/Downstream/44950
Upstream sequence
taaaagcataacctctaaaaacaaaggcaaaatgaaatacatgaacctaagtataataatgacttggcagattaactacaaagaggggaattattttaaa
Downstream sequence
taactttgTTACCCAGCAAATGACCCAAtttcttcaacaaataaattataagaaaaaagtgaaagagaagctatagattaaaaaatgagacattaaccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate