Basic Information
VIS ID
TVIS30009819
Fusion event
HIV-CIZ1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130933849/128171570 (Hg38)
End
130933849/128171570 (Hg38)
Orient
-
Location type
Intronic
Target gene
CIZ1
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-326 ; hsa-mir-18a-5p ; hsa-let-7d-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/302075; hsa-mir-12126/Downstream/73151;
Nearest TSS
ENST00000422679/Upstream/2109; ENST00000635766/Downstream/6038;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/10704, chr9-CpG: 79/Downstream/19670
Nearest cancer related gene
CIZ1(TSG, No orient, 0)
Upstream sequence
taatcccagcactttgggaggccaaggcaggcacatcataaggtcaagagttcaagaccagcctgaccaacatggtgaaaccccatctctactaagaata
Downstream sequence
caaaaaaaaaaaaaaaattagccgggtgtggtggcacgcgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate