Basic Information
VIS ID
TVIS30009822
Fusion event
HIV-MIR1268A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
131270923/128508644 (Hg38)
End
131270923/128508644 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR1268A
Nearest miRNA
hsa-let-7a-1/Upstream/115930; hsa-mir-12126/Downstream/1360961;
Nearest TSS
ENST00000422679/Upstream/3913; ENST00000494417/Downstream/15004;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/3646, chr9-CpG: 126/Downstream/43305
Upstream sequence
ACTGATTGTGTATACAGTAGCTTACTTCAGAATTCCTCGTGTTCTGTTCAGTGCTTTAGATTGCTTTCACATATGCTTTAGTGGGAATCTTTGTGCATTG
Downstream sequence
TCCCTTTTTCTGTAGTTAGGGTTATTTAGTCTGATTTTCATTAGAAGGATAGTAGTCTAGGTCATTATCAAGAAACCACTGTACTTTGTTTTCATCTGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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