Basic Information
VIS ID
TVIS30009843
Fusion event
HIV-LOC105376299 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134244208/131368821 (Hg38)
End
134244208/131368821 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376299
Nearest miRNA
hsa-let-7a-1/Upstream/742458; hsa-mir-126/Downstream/1576886;
Nearest TSS
ENST00000422679/Upstream/79009; ENST00000646130/Downstream/4815;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/60595, chr9-CpG: 45/Downstream/4480
Nearby gene
PLPP7(No orient, 59559)
Upstream sequence
atcccagctacttgggaggctgaggcaggagaattgcatgaagcgggaggcagaggttgcagtgagctgatatcatgccattgcactccagcccggtgac
Downstream sequence
agagcgagactccgtctcaaaaatgaataaataaataaataaaGAGAGCAATGGGGCTTTTGGGAGATGATTAAGTCACGAGAGGTGGATAccatgtaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate