Basic Information
VIS ID
TVIS30009844
Fusion event
HIV-PRRT1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134428835/131553448 (Hg38)
End
134428835/131553448 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRRT1B
Nearest miRNA
hsa-let-7a-1/Upstream/927085; hsa-mir-126/Downstream/1392259;
Nearest TSS
ENST00000422679/Upstream/7934; ENST00000444708/Downstream/68390;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/21662, chr9-CpG: 93/Downstream/1031
Nearby gene
UCK1(No orient, 22173)
Upstream sequence
tttgtcaatgtgccattgtgcaaagcacgtcacatggtcaagcccagatccaaggggtggagaaacagaGGGAACATCACAGGTAAAGGTGTGGAGGTAT
Downstream sequence
AAACAGCGTGGCAGGTGTATGGGGTGCAGGGGCCATGAGTGAGCCCCTAGCTGCTGGGAGGGGGTTGAGGCAGGACACGCCCAGGGGCTCATCATTCCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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