Basic Information
VIS ID
TVIS30009847
Fusion event
HIV-TTF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
135259556/132384169 (Hg38)
End
135259556/132384169 (Hg38)
Orient
+
Location type
Intronic
Target gene
TTF1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-let-7c-5p
Nearest miRNA
hsa-let-7a-1/Upstream/1757806; hsa-mir-126/Downstream/561538;
Nearest TSS
ENST00000422679/Upstream/4964; ENST00000393215/Downstream/22653;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/28773, chr9-CpG: 24/Downstream/22496
Nearest cancer related gene
TTF1(TSG, No orient, 0)
Upstream sequence
TTTACCAAAACAGATAACAGTAATTGGAGGGAGTGAATGTAGATGTTTAATAAGGACGGCTGGATTTTGACAGTTGCTGAACTGGGGTGATGGGTACATG
Downstream sequence
AAGCTTCATTTATTTTGTATCTGTCTAAAATTTTCCTAATAAAGTTTCTGAAAAAAATAATTGGGCATTGCTAAtaaagcagtacttagaagaaaacata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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