Basic Information
VIS ID
TVIS30009848
Fusion event
HIV-DDX31 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
135531095/132655708 (Hg38)
End
135531095/132655708 (Hg38)
Orient
+
Location type
Intronic
Target gene
DDX31
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-877-3p
Nearest miRNA
hsa-let-7a-1/Upstream/2029345; hsa-mir-126/Downstream/289999;
Nearest TSS
ENST00000422679/Upstream/43395; ENST00000483873/Downstream/14319;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/64855, chr9-CpG: 149/Downstream/13948
Upstream sequence
TATATTTTTGGTACTCTTTGAAATTTTTAAAACATATATGGTACATTATATCTAAAAAGTATTAATAAAAAAAACAGAAGAAACCAAAGTAATCCGAAAA
Downstream sequence
AGGCCCCTAAGCCAATGGTGCCTTGCACATTCAAAGTGCTCAAAGACACTGAATGAATGAACAAAACAACGTTACTGCCAAAGCTAAGCACAGAGTTAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate