Basic Information
VIS ID
TVIS30009852
Fusion event
HIV-FAM163B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.2
Reference genome
GRCh37/hg19
Start
136457696/133592574 (Hg38)
End
136457696/133592574 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM163B
Nearest miRNA
hsa-let-7a-1/Upstream/540515; hsa-mir-126/Downstream/786837;
Nearest TSS
ENST00000422679/Upstream/6377; ENST00000263611/Downstream/40525;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6420, chr9-CpG: 86/Downstream/16474
Nearby gene
FAM163B(No orient, 12328)
Upstream sequence
GAAGAGTGCCTTCCCTCTTCCAGGAAGGTGCCCACGCTGGCTGTGCTGAGGGGCTCACACAAGAAGGGCGAAGGGGTGGGGAGGCTGCGCCAGTGAACAT
Downstream sequence
TGCCCTCTCCGGCCAAGGGCCTGCCCTCTGCCAACTCGCAGCCACTCTCCTTGCCTTTCAGCCACCACCCTGGTCCTGCAGCCTTGCAGATAACTACCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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