VISDB Viral Integration Site DataBase

VIS ID

TVIS30009855

Fusion event

HIV-NACC2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.3

Reference genome

Start

End

138917496/136025650 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-423-3p ; hsa-mir-130b-3p ; hsa-mir-30b-5p ; hsa-mir-93-5p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-92b-3p ; hsa-mir-10a-5p ; hsa-mir-92a-3p ; hsa-mir-643 ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3202 ; hsa-mir-3160-5p ; hsa-mir-9500 ; hsa-mir-6891-5p ; hsa-mir-4779 ; hsa-mir-3173-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-6880-5p ; hsa-mir-2467-3p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-7106-3p ; hsa-mir-1827 ; hsa-mir-3919 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4524b-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548at-5p ; hsa-mir-6796-5p ; hsa-mir-6741-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6742-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-609 ; hsa-mir-4455 ; hsa-mir-6772-5p ; hsa-mir-486-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-526b-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-4295 ; hsa-mir-130a-3p ; hsa-mir-19a-3p ; hsa-mir-450a-1-3p ; hsa-mir-4639-5p ; hsa-mir-29b-2-5p ; hsa-mir-502-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-3148 ; hsa-mir-3189-3p ; hsa-mir-3662 ; hsa-mir-212-5p ; hsa-mir-6749-3p ; hsa-mir-658 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-5589-3p ; hsa-mir-4717-3p ; hsa-mir-7846-3p ; hsa-mir-517c-3p ; hsa-mir-517b-3p ; hsa-mir-517a-3p ; hsa-mir-4536-3p ; hsa-mir-552-3p ; hsa-mir-6768-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4636 ; hsa-mir-603 ; hsa-mir-8064 ; hsa-mir-8485 ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-1207-5p ; hsa-mir-1237-5p ; hsa-mir-1299 ; hsa-mir-1321 ; hsa-mir-148b-5p ; hsa-mir-3126-5p ; hsa-mir-3179 ; hsa-mir-4257 ; hsa-mir-4270 ; hsa-mir-4436b-3p ; hsa-mir-4441 ; hsa-mir-4476 ; hsa-mir-4488 ; hsa-mir-4632-5p ; hsa-mir-4697-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4763-3p ; hsa-mir-4782-5p ; hsa-mir-4792 ; hsa-mir-516b-5p ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-5706 ; hsa-mir-6081 ; hsa-mir-6165 ; hsa-mir-6515-5p ; hsa-mir-6721-5p ; hsa-mir-6735-5p ; hsa-mir-6754-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6874-3p ; hsa-mir-6875-5p ; hsa-mir-6876-5p ; hsa-mir-6879-5p ; hsa-mir-7843-5p ; hsa-mir-7845-5p ; hsa-mir-7854-3p ; hsa-mir-8054 ; hsa-mir-8080 ; hsa-mir-873-5p ; hsa-mir-3944-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1174843; hsa-mir-126/Downstream/493918;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/13575, chr9-CpG: 194/Downstream/24278

Upstream sequence

acaggcaacaagatggaaaatttcaccagaaaactagaatcaacaaaagggattaagtcctattaaaaaaaaaaaaaacgcagccgggcgcagtggctca

Downstream sequence

tgcctgtaatcccggcactctgggaggctgaggtgggccagtcacttgaggttaggagttcgagacagcctggccaaaacggcaagacctcgcctctact