VISDB Viral Integration Site DataBase

VIS ID

TVIS30009857

Fusion event

HIV-QSOX2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.3

Reference genome

Start

End

139132196/136240350 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-340-5p ; hsa-mir-16-5p ; hsa-mir-92a-3p ; hsa-mir-17-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-7109-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6090 ; hsa-mir-6853-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-6798-5p ; hsa-mir-1296-3p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4781-5p ; hsa-mir-6510-5p ; hsa-mir-602 ; hsa-mir-6873-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-3941 ; hsa-mir-6895-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-3184-3p ; hsa-mir-4719 ; hsa-mir-1283 ; hsa-mir-4303 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-3200-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1389543; hsa-mir-126/Downstream/279218;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/3544, chr9-CpG: 88/Downstream/5005

Upstream sequence

TATATAGTAGATTAACATTTATTTCAAATGTGCTTGTCAAATAACTCTAATACTGAATCTAACAAGGTTAACTCTTTACTGCTTGTCACGTTCTAATGAA

Downstream sequence

AAAGTCTACAGAAGTCTAATGTATAGTCCAGTATCAAATCGTTCTAGAAAATGATTACAGTAAAGATAAAACAATCTCCCAAGTTGAAAGGCAACTAGGG