VISDB Viral Integration Site DataBase

VIS ID

TVIS30009859

Fusion event

HIV-PMPCA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.3

Reference genome

Start

End

139307389/136412937 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-423-5p ; hsa-let-7e-5p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-7160-5p ; hsa-mir-6134 ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-7162-3p ; hsa-mir-219b-3p ; hsa-mir-6888-5p ; hsa-mir-1247-3p ; hsa-mir-302f ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4668-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4746-3p ; hsa-mir-5008-5p ; hsa-mir-4726-3p ; hsa-mir-383-3p ; hsa-mir-3692-5p ; hsa-mir-197-3p ; hsa-mir-6801-5p ; hsa-mir-6131 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-1226-3p

Nearest miRNA

hsa-let-7a-1/Upstream/1562130; hsa-mir-126/Downstream/106631;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/1594, chr9-CpG: 21/Downstream/5371

Upstream sequence

AAATTCTGCTTACGTTGGAAAAGCATGGGGGTATCTGTGACTGCCAGACATCAAGGTACACCAGCTTTTGTGTACAAACTGACTTTGGGTCCTTGGGAAC

Downstream sequence

TGACGTTCTTGTCGTTGCTCAGATTCCCTCTGAGCCCCTCCCAGCGGGAGGTGTGGAGATTCACGGGGAGAAGGAGCCCTGTCCTGGATGGAGACTTGGG