Basic Information
VIS ID
TVIS30009864
Fusion event
HIV-SEC16A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
End
139365341/136470889 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/1620082; hsa-mir-126/Downstream/48679;
Nearest CpG islands
Upstream sequence
AGTGCAGGTACAAAGTCTTCATTAATGAGTAGCTTTTTCTCTATTACCAAGTTTAAGAAGCAATATCCCCTTGCAGGAAGGCTCTATCTGTGAGACAGTC
Downstream sequence
TCTCTCAGATCTCACAAGGAGCAAGTGCAGCTAAGGCCCTGGAAGGCGCAGCCTAGCGCGGTGGCCAGGACCACGCCCACCCCTCGCAGGGCTCTGCGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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