Basic Information
VIS ID
TVIS30009871
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139771042/136876590 (Hg38)
End
139771042/136876590 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/45567; hsa-mir-3621/Downstream/10143;
Nearest TSS
ENST00000422679/Upstream/10304; ENST00000414589/Downstream/5322;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/9836, chr9-CpG: 137/Downstream/9364
Nearby gene
TRAF2(No orient, 9923)
Upstream sequence
TTACATTCTCTTAAGTTCTTTTTATAGCATTGAATTTTATAGCATTCTATTTCACAAATTCTTCTCTTTTTTCTTCTAAGATTACTAATTTGGTTCTTCT
Downstream sequence
CACATTCTCCTCTGGTGCCTGTACCCTCCCTCTCCGCTCTTTTGTTTGGTTCAGGGCTCTGTTTTTTCCCTGTGTCTGGCAATCCTTGCTAAGGTCAGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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