Basic Information
VIS ID
TVIS30009876
Fusion event
HIV-MAN1B1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139983485/137089033 (Hg38)
End
139983485/137089033 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAN1B1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/202230; hsa-mir-3621/Downstream/80153;
Nearest TSS
ENST00000422679/Upstream/1675; ENST00000536268/Downstream/148;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1598, chr9-CpG: 14/Downstream/14361
Upstream sequence
AATCCACCCGTCTTACCAGCTCCTCAGAAGGCGGACACCGACCCTGAGAACTTACCTGAGATTTCGTCACAGGTACTTTGAGCAAATGGTGTGGGGTTAT
Downstream sequence
AACTGGGGTTCAATCCAGAGGCATTTCAAACCACTGAAGATTGAGAAGAATTATTTTCCTTTACCATTTATTACCACGTGTTTACCTCTCTCTCGTTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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