Basic Information
VIS ID
TVIS30009878
Fusion event
HIV-MAN1B1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139985458/137091006 (Hg38)
End
139985458/137091006 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAN1B1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/204203; hsa-mir-3621/Downstream/78180;
Nearest TSS
ENST00000422679/Upstream/1825; ENST00000536268/Downstream/11507;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/3571, chr9-CpG: 14/Downstream/12388
Upstream sequence
GTACCAAAAAGCAGAAGGAAGCAAACCCACATTCTCCTTTCAAAGGCAGCATTCCTGTCGCTGAGCAGCTTCTCCAAGGGTGGTCTAGCCGGGCAGAGGG
Downstream sequence
TGTAGGGTGGGAATTGGCCCCTAGAAGGTGCCGTGCCTGATGGGAGAGTCCTGCTCTTGATTGGCCATGGGGCCACTGCTCCACACTCTTCGGTGTGAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate