Basic Information
VIS ID
TVIS30009881
Fusion event
HIV-ARRDC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
140503422/137608970 (Hg38)
End
140503422/137608970 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARRDC1
miRNAs that regulate target gene
hsa-mir-326
Nearest miRNA
hsa-let-7a-1/Upstream/158884; hsa-mir-602/Downstream/229449;
Nearest TSS
ENST00000422679/Upstream/3229; ENST00000468983/Downstream/2481;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2531, chr9-CpG: 139/Downstream/9470
Upstream sequence
CTCTGGCAGAGTCATCTCAAAGAGCCTTGGTGTATGTGCAAAACGGGGCCATCTGCATGGGCGTTGGGAAGATCACAGAACCTGGACCCTTAGGATGACC
Downstream sequence
CAAGGGTCAGTTGCATACTGTTTGTTTTTGTGGAGTCAATGTCCCATGACGGTTTTCGCGATGCTTTGCTAGTAGGAGCAGTGGCGTGTGAGGCTCCCGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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