Basic Information
VIS ID
TVIS30009883
Fusion event
HIV-EHMT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
140533072/137638620 (Hg38)
End
140533072/137638620 (Hg38)
Orient
+
Location type
Intronic
Target gene
EHMT1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-30e-5p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/188534; hsa-mir-602/Downstream/199799;
Nearest TSS
ENST00000422679/Upstream/18573; ENST00000636081/Downstream/7757;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/19100, chr9-CpG: 67/Downstream/54939
Upstream sequence
aggcatgagccactgcacccggccTAGTTTTTTACTAGTTTCTTAATGCTTTTAGCTAtgttatagaataaattgcattcccctaaaaaatatgttgaag
Downstream sequence
tcctaaaccccatacttcagaatttgaccttatttggaaatagggtcattgcagattagttaagatgaaatcatagttgagtagggtaggcctctaatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate