Basic Information
VIS ID
TVIS30009887
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
9166670/9198629 (Hg38)
End
9166670/9198629 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/1071568; hsa-let-7f-2/Downstream/2119985;
Nearest TSS
ENST00000429181/Upstream/33990; ENST00000432442/Downstream/51291;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/397111, chrX-CpG: 22/Downstream/144049
Nearby gene
FAM9B(No orient, 164502)
Upstream sequence
ATGTGGAATACCTGCAACATCCAAACCATCTGCTTCACTGCATTTTAAAAAAGAGTAGGTGAAGAAAATTTATGAGCATTTCCTCTTATGTGTTGTTGCT
Downstream sequence
AGGGAAACAACTTTTTTTTTTTTTTTTTTCTTAAGCACGGATGATTCTAGCATCTCAAAAGAACCAGGGCACAATCTTTCTTCCCCTCTTTCTTCAAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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