Basic Information
VIS ID
TVIS30009889
Fusion event
HIV-TBL1X integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
9602843/9634803 (Hg38)
End
9602843/9634803 (Hg38)
Orient
-
Location type
Intronic
Target gene
TBL1X
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-92a-3p ; hsa-mir-4330 ; hsa-mir-589-3p ; hsa-mir-3163 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-676-5p ; hsa-mir-1276 ; hsa-mir-4761-5p
Nearest miRNA
hsa-mir-3690-1/Upstream/1507742; hsa-let-7f-2/Downstream/1683811;
Nearest TSS
ENST00000429181/Upstream/74338; ENST00000497555/Downstream/5017;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/168323, chrX-CpG: 74/Downstream/130311
Upstream sequence
GTGGAGCCGTTTTTCAGATGACACATACTAAACATCTACTAAACAGCCTGAGAAACGGCACTCTGAAGAGCATGCCTTGGCAAACACTCCCCTACTTACT
Downstream sequence
CTAAAACTCCAGTCGATTGGCTTCCAAGTTCACTTGGTtctcatttttcctggcaacaactctgcaaattattacccccatttgatgaggTGCTGGCTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate