Basic Information
VIS ID
TVIS30009893
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
13114481/13096362 (Hg38)
End
13114481/13096362 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/1777676; hsa-let-7f-2/Downstream/493930;
Nearest TSS
ENST00000429181/Upstream/2702; ENST00000431486/Downstream/207030;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/119882, chrX-CpG: 52/Downstream/282407
Nearby gene
FAM9C(No orient, 51564)
Upstream sequence
CTCTGCTCCGCATAtttttttttttttttttttttttttttgagatggagtttcactctgtcacccaggctggagtgcagtggcgtgatctcggctcact
Downstream sequence
gtatcctccacctcctgggtttaagcaattctctgcctcagcctcccgagtagctgagattacaggcgtccaccaccacaccaggctatttttttttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate