Basic Information
VIS ID
TVIS30009896
Fusion event
HIV-CA5BP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
15714440/15696317 (Hg38)
End
15714440/15696317 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CA5BP1
Nearest miRNA
hsa-mir-3690-1/Upstream/2105971; hsa-let-7f-2/Downstream/930695;
Nearest TSS
ENST00000429181/Upstream/7487; ENST00000474624/Downstream/41953;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/20367, chrX-CpG: 47/Downstream/41611
Upstream sequence
AATCTCAAAGGGCTGTGCTCTGGAGGCCCATATATTGtctccttctccctttcatcccccactgtatccttctggtccccacctctttccccctgctttc
Downstream sequence
ctctccatttccctcttttttcctctctcccCTTTTAGTCCAGGTTTCTGGCTCCTCCTGATCTGCATTTCATTTTTTGtttgtttctatcaacttttat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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