Basic Information
VIS ID
TVIS30009904
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.12
Reference genome
GRCh37/hg19
Start
20141821/20123703 (Hg38)
End
20141821/20123703 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/106516; hsa-let-7f-2/Downstream/8371852;
Nearest TSS
ENST00000429181/Upstream/6786; ENST00000424026/Downstream/16265;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/6471, chrX-CpG: 82/Downstream/17600
Nearby gene
EIF1AX(No orient, 815)
Upstream sequence
TTTGGTAGATAACCTAAGAAAATTCCCAAccgggcatggtagctcacgcctgtaatctcagcactttgaaggctgaggcgggcggatcacttgaggtcag
Downstream sequence
gaattcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatccaaaaatcagctgggcgtggtgatgcgcgcctgtaatcccagttact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate