VISDB Viral Integration Site DataBase

VIS ID

TVIS30009910

Fusion event

HIV-ZFX integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.11

Reference genome

Start

End

24185791/24167674 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-98-5p ; hsa-mir-484 ; hsa-mir-144-3p ; hsa-let-7f-2-3p ; hsa-mir-16-1-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-675-3p ; hsa-mir-873-3p ; hsa-mir-297 ; hsa-mir-1257 ; hsa-mir-3149 ; hsa-mir-3672 ; hsa-mir-4499 ; hsa-mir-6864-3p ; hsa-mir-218-5p ; hsa-mir-329-5p ; hsa-mir-409-3p ; hsa-mir-636 ; hsa-mir-548m ; hsa-mir-567 ; hsa-mir-142-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-3158-5p ; hsa-mir-4257 ; hsa-mir-3119 ; hsa-mir-509-3p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-4501 ; hsa-mir-6782-3p ; hsa-mir-33a-3p ; hsa-mir-551b-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-8485 ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-5088-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-23c/Upstream/4150487; hsa-let-7f-2/Downstream/4327881;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/17006, chrX-CpG: 64/Downstream/145852

Upstream sequence

cacccaaaaaagaaaagattgctatggaaaagaaactattagaattaaaatatgaacttttaaagaaaaattcagtagatggggtggagatcaaattagc

Downstream sequence

tagcttagaagaaagaattcagggattctctgagagtgtagtagaaagacaaaatctgagagaaaagttaaagcaatatagaagctagatttagtagcct