VISDB Viral Integration Site DataBase

VIS ID

TVIS30009911

Fusion event

HIV-PDK3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.11

Reference genome

Start

End

24490375/24472258 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-369-3p ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-1273e ; hsa-mir-377-3p ; hsa-mir-3200-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1227-3p ; hsa-mir-658 ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-196a-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-5007-3p ; hsa-mir-3160-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-3190-5p ; hsa-mir-340-3p ; hsa-mir-3613-3p ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-548s ; hsa-mir-6771-3p ; hsa-mir-6827-3p ; hsa-mir-6849-3p

Nearest miRNA

hsa-mir-23c/Upstream/4455071; hsa-let-7f-2/Downstream/4023297;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/6428, chrX-CpG: 56/Downstream/221255

Upstream sequence

ctaggcttgaatttttggttctagtggttatctttatagttattactttattTCTATAGACCTTtgtcccatatgggtcaccacttgtcagccaggagac

Downstream sequence

ctttgagcacttgaaatgtggctagtgtggccgaaaaactgaattgacttaatttaaatttaaAATGgatacttgatgcagttaatttttacatctgtgt