Basic Information
VIS ID
TVIS30009913
Fusion event
HIV-IL1RAPL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
28728092/28709975 (Hg38)
End
28728092/28709975 (Hg38)
Orient
-
Location type
Intronic
Target gene
IL1RAPL1
miRNAs that regulate target gene
hsa-mir-151a-5p ; hsa-mir-4307 ; hsa-mir-6768-5p ; hsa-mir-8485 ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-6840-5p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-7108-5p ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-6867-5p ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-663b ; hsa-mir-5197-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-4279 ; hsa-mir-100-3p ; hsa-mir-539-5p
Nearest miRNA
hsa-mir-23c/Upstream/214312; hsa-let-7f-2/Downstream/864303;
Nearest TSS
ENST00000429181/Upstream/122576; ENST00000302196/Downstream/1207488;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/845920, chrX-CpG: 30/Downstream/1537080
Upstream sequence
cattccacagacgtacttataCTGTATTGTTTTAAAAGTGAAAAAAATGACATAGATGACCTTCAAAAGGAGAACTGTTGGATTGTATTTTAGTGTACTC
Downstream sequence
TGAAGTATTTAAAAAGATGGAGGCTCATCTATTTTTATAGACAGCGAGAGATGCTTGTAATTTATTGTACAGTGGAACAAAGTGATTTGATGAACAATAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate