Basic Information
VIS ID
TVIS30009915
Fusion event
HIV-TAB3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
30867631/30849514 (Hg38)
End
30867631/30849514 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRAXC
Target gene
TAB3
miRNAs that regulate target gene
hsa-mir-23b-3p ; hsa-mir-195-5p ; hsa-mir-512-5p ; hsa-mir-181a-5p ; hsa-mir-188-5p ; hsa-mir-192-3p ; hsa-mir-5581-3p ; hsa-mir-6872-3p ; hsa-mir-1255b-2-3p ; hsa-mir-4303 ; hsa-mir-3653-3p ; hsa-mir-610 ; hsa-mir-1252-5p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-342-3p ; hsa-mir-30a-5p ; hsa-mir-892b
Nearest miRNA
hsa-mir-23c/Upstream/1275156; hsa-let-7f-2/Downstream/1734142;
Nearest TSS
ENST00000429181/Upstream/14891; ENST00000445240/Downstream/3373;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/195762, chrX-CpG: 77/Downstream/39270
Upstream sequence
ATCAATTTTGTATATACTGCCTGATAAGCAGTTTGTTTGAAAACTTGAAGGTAGCAATGTGTGCTTTAGTAGCAAAAATGTCAATTCTCCACTGGGTATT
Downstream sequence
CCTATACACAAGTGGGACaatgataaggctagccatctactgttcacatacttcatgccaggcttattacatacactgtctctttatcttgacaattatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate