Basic Information
VIS ID
TVIS30009916
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
30983384/30965267 (Hg38)
End
30983384/30965267 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRAXC
Nearest miRNA
hsa-mir-23c/Upstream/1390909; hsa-let-7f-2/Downstream/1618389;
Nearest TSS
ENST00000429181/Upstream/75873; ENST00000439592/Downstream/9817;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/75656, chrX-CpG: 41/Downstream/106502
Nearby gene
TAB3(No orient, 75873)
Upstream sequence
CAGATGCAAGTCACTACAGGGggccgggcacggtggctcatgcctgtaatcccagcactttggaagcccgaaatgggtggatcacaaggtcaggagtttg
Downstream sequence
agaccagcggggccaacgtggtgaaaccccgtctctactaaaaacacgaaaagtagccaggtgttgtggtgtgctcctgtagtcccagctactcagggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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